Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity

Turcot, Valerie and Lu, Yingchang and Highland, Heather M. and Schurmann, Claudia and Justice, Anne E. and Fine, Rebecca S. and Bradfield, Jonathan P. and Esko, Tonu and Giri, Ayush and Graff, Mariaelisa and Guo, Xiuqing and Hendricks, Audrey E. and Karaderi, Tugce and Lempradl, Adelheid and Locke, Adam E. and Mahajan, Anubha and Marouli, Eirini and Sivapalaratnam, Suthesh and Young, Kristin L. and Alfred, Tamuno and Feitosa, Mary F. and Masca, Nicholas G. D. and Manning, Alisa K. and Medina-Gomez, Carolina and Mudgal, Poorva and Ng, Maggie C. Y. and Reiner, Alex P. and Vedantam, Sailaja and Willems, Sara M. and Winkler, Thomas W. and Abecasis, Goncalo and Aben, Katja K. and Alam, Dewan S. and Alharthi, Sameer E. and Allison, Matthew and Amouyel, Philippe and Asselbergs, Folkert W. and Auer, Paul L. and Balkau, Beverley and Bang, Lia E. and Barroso, Ines and Bastarache, Lisa and Benn, Marianne and Bergmann, Sven and Bielak, Lawrence F. and Blueher, Matthias and Boehnke, Michael and Boeing, Heiner and Boerwinkle, Eric and Boeger, Carsten A. and Bork-Jensen, Jette and Bots, Michiel L. and Bottinger, Erwin P. and Bowden, Donald W. and Brandslund, Ivan and Breen, Gerome and Brilliant, Murray H. and Broer, Linda and Brumat, Marco and Burt, Amber A. and Butterworth, Adam S. and Campbell, Peter T. and Cappellani, Stefania and Carey, David J. and Catamo, Eulalia and Caulfield, Mark J. and Chambers, John C. and Chasman, Daniel I. and Chen, Yii-Der I. and Chowdhury, Rajiv and Christensen, Cramer and Chu, Audrey Y. and Cocca, Massimiliano and Collins, Francis S. and Cook, James P. and Corley, Janie and Galbany, Jordi Corominas and Cox, Amanda J. and Crosslin, David S. and Cuellar-Partida, Gabriel and D'Eustacchio, Angela and Danesh, John and Davies, Gail and Bakker, Paul I. W. and Groot, Mark C. H. and Mutsert, Renee and Deary, Ian J. and Dedoussis, George and Demerath, Ellen W. and Heijer, Martin and Hollander, Anneke I. and Ruijter, Hester M. and Dennis, Joe G. and Denny, Josh C. and Angelantonio, Emanuele and Drenos, Fotios and Du, Mengmeng and Dube, Marie-Pierre and Dunning, Alison M. and Easton, Douglas F. and Edwards, Todd L. and Ellinghaus, David and Ellinor, Patrick T. and Elliott, Paul and Evangelou, Evangelos and Farmaki, Aliki-Eleni and Farooqi, I. Sadaf and Faul, Jessica D. and Fauser, Sascha and Feng, Shuang and Ferrannini, Ele and Ferrieres, Jean and Florez, Jose C. and Ford, Ian and Fornage, Myriam and Franco, Oscar H. and Franke, Andre and Franks, Paul W. and Friedrich, Nele and Frikke-Schmidt, Ruth and Galesloot, Tessel E. and Gan, Wei and Gandin, Ilaria and Gasparini, Paolo and Gibson, Jane and Giedraitis, Vilmantas and Gjesing, Anette P. and Gordon-Larsen, Penny and Gorski, Mathias and Grabe, Hans-Joergen and Grant, Struan F. A. and Grarup, Niels and Griffiths, Helen L. and Grove, Megan L. and Gudnason, Vilmundur and Gustafsson, Stefan and Haessler, Jeff and Hakonarson, Hakon and Hammerschlag, Anke R. and Hansen, Torben and Harris, Kathleen Mullan and Harris, Tamara B. and Hattersley, Andrew T. and Have, Christian T. and Hayward, Caroline and He, Liang and Heard-Costa, Nancy L. and Heath, Andrew C. and Heid, Iris M. and Helgeland, Oyvind and Hernesniemi, Jussi and Hewitt, Alex W. and Holmen, Oddgeir L. and Hovingh, G. Kees and Howson, Joanna M. M. and Hu, Yao and Huang, Paul L. and Huffman, Jennifer E. and Ikram, M. Arfan and Ingelsson, Erik and Jackson, Anne U. and Jansson, Jan-Hakan and Jarvik, Gail P. and Jensen, Gorm B. and Jia, Yucheng and Johansson, Stefan and Jorgensen, Marit E. and Jorgensen, Torben and Jukema, J. Wouter and Kahali, Bratati and Kahn, Rene S. and Kahonen, Mika and Kamstrup, Pia R. and Kanoni, Stavroula and Kaprio, Jaakko and Karaleftheri, Maria and Kardia, Sharon L. R. and Karpe, Fredrik and Kathiresan, Sekar and Kee, Frank and Kiemeney, Lambertus A. and Kim, Eric and Kitajima, Hidetoshi and Komulainen, Pirjo and Kooner, Jaspal S. and Kooperberg, Charles and Korhonen, Tellervo and Kovacs, Peter and Kuivaniemi, Helena and Kutalik, Zoltan and Kuulasmaa, Kari and Kuusisto, Johanna and Laakso, Markku and Lakka, Timo A. and Lamparter, David and Lange, Ethan M. and Lange, Leslie A. and Langenberg, Claudia and Larson, Eric B. and Lee, Nanette R. and Lehtimaki, Terho and Lewis, Cora E. and Li, Huaixing and Li, Jin and Li-Gao, Ruifang and Lin, Honghuang and Lin, Keng-Hung and Lin, Li-An and Lin, Xu and Lind, Lars and Lindstrom, Jaana and Linneberg, Allan and Liu, Ching-Ti and Liu, Dajiang J. and Liu, Yongmei and Lo, Ken S. and Lophatananon, Artitaya and Lotery, Andrew J. and Loukola, Anu and Luan, Jian'an and Lubitz, Steven A. and Lyytikainen, Leo-Pekka and Mannisto, Satu and Marenne, Gaelle and Mazul, Angela L. and McCarthy, Mark I. and McKean-Cowdin, Roberta and Medland, Sarah E. and Meidtner, Karina and Milani, Lili and Mistry, Vanisha and Mitchell, Paul and Mohlke, Karen L. and Moilanen, Leena and Moitry, Marie and Montgomery, Grant W. and Mook-Kanamori, Dennis O. and Moore, Carmel and Mori, Trevor A. and Morris, Andrew D. and Morris, Andrew P. and Mueller-Nurasyid, Martina and Munroe, Patricia B. and Nalls, Mike A. and Narisu, Narisu and Nelson, Christopher P. and Neville, Matt and Nielsen, Sune F. and Nikus, Kjell and Njolstad, Pal R. and Nordestgaard, Borge G. and Nyholt, Dale R. and O'Connel, Jeffrey R. and O'Donoghue, Michelle L. and Loohuis, Loes M. Olde and Ophoff, Roel A. and Owen, Katharine R. and Packard, Chris J. and Padmanabhan, Sandosh and Palmer, Colin N. A. and Palmer, Nicholette D. and Pasterkamp, Gerard and Patel, Aniruddh P. and Pattie, Alison and Pedersen, Oluf and Peissig, Peggy L. and Peloso, Gina M. and Pennell, Craig E. and Perola, Markus and Perry, James A. and Perry, John R. B. and Pers, Tune H. and Person, Thomas N. and Peters, Annette and Petersen, Eva R. B. and Peyser, Patricia A. and Pirie, Ailith and Polasek, Ozren and Polderman, Tinca J. and Puolijoki, Hannu and Raitakari, Olli T. and Rasheed, Asif and Rauramaa, Rainer and Reilly, Dermot F. and Renstrom, Frida and Rheinberger, Myriam and Ridker, Paul M. and Rioux, John D. and Rivas, Manuel A. and Roberts, David J. and Robertson, Neil R. and Robino, Antonietta and Rolandsson, Olov and Rudan, Igor and Ruth, Katherine S. and Saleheen, Danish and Salomaa, Veikko and Samani, Nilesh J. and Sapkota, Yadav and Sattar, Naveed and Schoen, Robert E. and Schreiner, Pamela J. and Schulze, Matthias B. and Scott, Robert A. and Segura-Lepe, Marcelo P. and Shah, Svati H. and Sheu, Wayne H. -H. and Sim, Xueling and Slater, Andrew J. and Small, Kerrin S. and Smith, Albert V. and Southam, Lorraine and Spector, Timothy D. and Speliotes, Elizabeth K. and Starr, John M. and Stefansson, Kari and Steinthorsdottir, Valgerdur and Stirrups, Kathleen E. and Strauch, Konstantin and Stringham, Heather M. and Stumvoll, Michael and Sun, Liang and Surendran, Praveen and Swift, Amy J. and Tada, Hayato and Tansey, Katherine E. and Tardif, Jean-Claude and Taylor, Kent D. and Teumer, Alexander and Thompson, Deborah J. and Thorleifsson, Gudmar and Thorsteinsdottir, Unnur and Thuesen, Betina H. and Toenjes, Anke and Tromp, Gerard and Trompet, Stella and Tsafantakis, Emmanouil and Tuomilehto, Jaakko and Tybjaerg-Hansen, Anne and Tyrer, Jonathan P. and Uher, Rudolf and Uitterlinden, Andre G. and Uusitupa, Matti and Laan, Sander W. and Duijn, Cornelia M. and Leeuwen, Nienke and van Setten, Jessica and Vanhala, Mauno and Varbo, Anette and Varga, Tibor V. and Varma, Rohit and Edwards, Digna R. Velez and Vermeulen, Sita H. and Veronesi, Giovanni and Vestergaard, Henrik and Vitart, Veronique and Vogt, Thomas F. and Voelker, Uwe and Vuckovic, Dragana and Wagenknecht, Lynne E. and Walker, Mark and Wallentin, Lars and Wang, Feijie and Wang, Carol A. and Wang, Shuai and Wang, Yiqin and Ware, Erin B. and Wareham, Nicholas J. and Warren, Helen R. and Waterworth, Dawn M. and Wessel, Jennifer and White, Harvey D. and Willer, Cristen J. and Wilson, James G. and Witte, Daniel R. and Wood, Andrew R. and Wu, Ying and Yaghootkar, Hanieh and Yao, Jie and Yao, Pang and Yerges-Armstrong, Laura M. and Young, Robin and Zeggini, Eleftheria and Zhan, Xiaowei and Zhang, Weihua and Zhao, Jing Hua and Zhao, Wei and Zhou, Wei and Zondervan, Krina T. and Rotter, Jerome I. and Pospisilik, John A. and Rivadeneira, Fernando and Borecki, Ingrid B. and Deloukas, Panos and Frayling, Timothy M. and Lettre, Guillaume and North, Kari E. and Lindgren, Cecilia M. and Hirschhorn, Joel N. and Loos, Ruth J. F. (2018) Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity. NATURE GENETICS, 50 (1). 26-+. ISSN 1061-4036, 1546-1718

Full text not available from this repository. (Request a copy)

Abstract

Genome-wide association studies (GWAS) have identified >250 loci for body mass index (BMI), implicating pathways related to neuronal biology. Most GWAS loci represent clusters of common, noncoding variants from which pinpointing causal genes remains challenging. Here we combined data from 718,734 individuals to discover rare and low-frequency (minor allele frequency (MAF) < 5%) coding variants associated with BMI. We identified 14 coding variants in 13 genes, of which 8 variants were in genes (ZBTB7B, ACHE, RAPGEF3, RAB21, ZFHX3, ENTPD6, ZFR2 and ZNF169) newly implicated in human obesity, 2 variants were in genes (MC4R and KSR2) previously observed to be mutated in extreme obesity and 2 variants were in GIPR. The effect sizes of rare variants are similar to 10 times larger than those of common variants, with the largest effect observed in carriers of an MC4R mutation introducing a stop codon (p.Tyr35Ter, MAF = 0.01%), who weighed similar to 7 kg more than non-carriers. Pathway analyses based on the variants associated with BMI confirm enrichment of neuronal genes and provide new evidence for adipocyte and energy expenditure biology, widening the potential of genetically supported therapeutic targets in obesity.

Item Type: Article
Uncontrolled Keywords: GENOME-WIDE ASSOCIATION; MELANOCORTIN-4 RECEPTOR GENE; DONEPEZIL 23 MG; FRAMESHIFT MUTATION; GLUCOSE-HOMEOSTASIS; HYPOTHALAMIC AMPK; CODING VARIANTS; BLOOD-PRESSURE; RARE; LOCI;
Subjects: 600 Technology > 610 Medical sciences Medicine
Divisions: Medicine > Institut für Epidemiologie und Präventivmedizin > Lehrstuhl für Genetische Epidemiologie
Depositing User: Dr. Gernot Deinzer
Date Deposited: 23 Mar 2020 11:58
Last Modified: 23 Mar 2020 11:58
URI: https://pred.uni-regensburg.de/id/eprint/15278

Actions (login required)

View Item View Item