Tucholski, Tim and Maennel, Angela and Nsangou, Yacoub Abelard Njipouombe and Schuchardt, Sven and Gruber, Matthias and Kellermeier, Fabian and Dettmer, Katja and Oefner, Peter J. and Gronwald, Wolfram and Altenbuchinger, Michael and Doenitz, Jurgen and Zacharias, Helena U. (2025) MetaboSERV-a platform for selecting, exchanging, and visualizing metabolomics data with controlled data access. GIGASCIENCE, 14: giaf075. ISSN 2047-217X,
Full text not available from this repository. (Request a copy)Abstract
Background The growing number of metabolomics studies, based on high-dimensional data measured by hyphenated mass spectrometry (MS) and/or nuclear magnetic resonance (NMR) spectroscopy, has sparked the creation of several public metabolomics data repositories. Each repository emphasizes different aspects regarding data selection and representation, but most offer only limited options for privacy-preserving data sharing.Results We present MetaboSERV, an open-source, browser-based metabolomics platform dedicated to the selection, integration, and sharing of quantitative metabolomics data and metadata with controlled data access. MetaboSERV aims to aid researchers in analyzing their results by facilitating means to browse, visualize, and compare data across available datasets. It provides different access control functionalities, creating an environment in which data can be shared safely in a privacy-preserving manner to support collaborative and interdisciplinary research. Furthermore, it is designed to be extensible and adaptable to existing data management infrastructures through the creation of self-managed MetaboSERV instances, for which we provide the source code and a set of configurable Docker images.Conclusions The public MetaboSERV instance is available at https://metaboserv.ckdn.app, and the source code can be found at https://gitlab.gwdg.de/MedBioinf/metabolomics/metaboserv. The Research Resource Identifier (RRID) for MetaboSERV is SCR_025496.
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | ACUTE KIDNEY INJURY; REPOSITORY; METABOLIGHTS; DISCOVERY; URINE; (privacy-preserving) data sharing; metabolomics; nuclear magnetic resonance spectroscopy; mass spectrometry; collaborative research |
| Subjects: | 500 Science > 570 Life sciences 600 Technology > 610 Medical sciences Medicine |
| Divisions: | Medicine > Institut für Funktionelle Genomik > Lehrstuhl für Funktionelle Genomik (Prof. Oefner) |
| Depositing User: | Dr. Gernot Deinzer |
| Date Deposited: | 20 Apr 2026 04:26 |
| Last Modified: | 20 Apr 2026 04:26 |
| URI: | https://pred.uni-regensburg.de/id/eprint/67676 |
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