Items where Author is "Erhard, Florian"

Article

Bernhardt, Melissa and Rech, Anne and Berthold, Marion and Lappe, Melina and Herbel, Jan-Niklas and Erhard, Florian and Paschen, Annette and Schilling, Bastian and Schlosser, Andreas (2025) SILAC-based quantification reveals modulation of the immunopeptidome in BRAF and MEK inhibitor sensitive and resistant melanoma cells. FRONTIERS IN IMMUNOLOGY, 15: 1490821. ISSN 1664-3224,

Luzak, Vanessa and Osses, Esteban and Danese, Anna and Odendaal, Christoff and Cosentino, Raul O. and Stricker, Stefan H. and Haanstra, Jurgen R. and Erhard, Florian and Siegel, T. Nicolai (2025) SLAM-seq reveals independent contributions of RNA processing and stability to gene expression in African trypanosomes. NUCLEIC ACIDS RESEARCH, 53 (3). ISSN 0305-1048, 1362-4962

Weller, Chen and Bartok, Osnat and Mcginnis, Christopher S. and Palashati, Heyilimu and Chang, Tian-Gen and Malko, Dmitry and Shmueli, Merav D. and Nagao, Asuteka and Hayoun, Deborah and Murayama, Ayaka and Sakaguchi, Yuriko and Poulis, Panagiotis and Khatib, Aseel and Avigdor, Bracha Erlanger and Gordon, Sagi and Shvefel, Sapir Cohen and Zemanek, Marie J. and Nielsen, Morten M. and Boura-Halfon, Sigalit and Sagie, Shira and Gumpert, Nofar and Yang, Weiwen and Alexeev, Dmitry and Kyriakidou, Pelgia and Yao, Winnie and Zerbib, Mirie and Greenberg, Polina and Benedek, Gil and Litchfield, Kevin and Petrovich-Kopitman, Ekaterina and Nagler, Adi and Oren, Roni and Ben-Dor, Shifra and Levin, Yishai and Pilpel, Yitzhak and Rodnina, Marina and Cox, Jurgen and Merbl, Yifat and Satpathy, Ansuman T. and Carmi, Yaron and Erhard, Florian and Suzuki, Tsutomu and Buskirk, Allen R. and Olweus, Johanna and Ruppin, Eytan and Schlosser, Andreas and Samuels, Yardena (2025) Translation dysregulation in cancer as a source for targetable antigens. CANCER CELL, 43 (5). ISSN 1535-6108, 1878-3686

Delazer, Isabel and Bauer, Ingo and Rummel, Teresa and Nykiel, Kamila and Rieder, Dietmar and Fickl, Magdalena and Tumler, Valentin and Razkova, Anna and Schaefer, Matthias R. and Scheed, Thalissa and Erlacher, Matthias D. and Erhard, Florian and Micura, Ronald and Lusser, Alexandra (2025) mRNA turnover dynamics are affected by cell differentiation and loss of the cytosine methyltransferase Nsun2. NUCLEIC ACIDS RESEARCH, 53 (19): gkaf995. ISSN 0305-1048, 1362-4962

Linder, Bastian and Sharma, Puneet and Wu, Jie and Birbaumer, Tosca and Eggers, Cristian and Murakami, Shino and Ott, Roman E. and Fenzl, Kai and Vorgerd, Hannah and Erhard, Florian and Jaffrey, Samie R. and Leidel, Sebastian A. and Steinmetz, Lars M. (2025) tRNA modifications tune m6A-dependent mRNA decay. CELL, 188 (14). pp. 3715-3727. ISSN 0092-8674, 1097-4172

Fishman, Lior and Modak, Avani and Nechooshtan, Gal and Razin, Talya and Erhard, Florian and Regev, Aviv and Farrell, Jeffrey A. and Rabani, Michal (2024) Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq. NATURE COMMUNICATIONS, 15 (1): 3104. ISSN 2041-1723

Merignac-Lacombe, Jeanne and Kornbausch, Nicole and Sivarajan, Rinu and Boichot, Valentin and Berg, Kevin and Oberwinkler, Heike and Saliba, Antoine-Emmanuel and Loos, Helene M. and Kasemo, Totta Ehret and Scherzad, Agmal and Bodem, Jochen and Buettner, Andrea and Neiers, Fabrice and Erhard, Florian and Hackenberg, Stephan and Heydel, Jean-Marie and Steinke, Maria (2024) Characterization of a Human Respiratory Mucosa Model to Study Odorant Metabolism. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 72 (22). pp. 12696-12706. ISSN 0021-8561, 1520-5118

Berg, Kevin and Lodha, Manivel and Delazer, Isabel and Bartosik, Karolina and Garcia, Yilliam Cruz and Hennig, Thomas and Wolf, Elmar and Doelken, Lars and Lusser, Alexandra and Prusty, Bhupesh K. and Erhard, Florian (2024) Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. NUCLEIC ACIDS RESEARCH, 52 (7). e35. ISSN 0305-1048, 1362-4962

Dirks, Johannes and Fischer, Jonas and Klaussner, Julia and Hofmann, Christine and Holl-Wieden, Annette and Buck, Viktoria and Klemann, Christian and Girschick, Hermann J. and Caruana, Ignazio and Erhard, Florian and Morbach, Henner (2024) Disease-specific T cell receptors maintain pathogenic T helper cell responses in postinfectious Lyme arthritis. JOURNAL OF CLINICAL INVESTIGATION, 134 (17): e179391. ISSN 0021-9738, 1558-8238

Costa, Bibiana and Becker, Jennifer and Krammer, Tobias and Mulenge, Felix and Duran, Veronica and Pavlou, Andreas and Gern, Olivia Luise and Chu, Xiaojing and Li, Yang and Cicin-Sain, Luka and Eiz-Vesper, Britta and Messerle, Martin and Doelken, Lars and Saliba, Antoine-Emmanuel and Erhard, Florian and Kalinke, Ulrich (2024) Human cytomegalovirus exploits STING signaling and counteracts IFN/ISG induction to facilitate infection of dendritic cells. NATURE COMMUNICATIONS, 15 (1): 1745. ISSN 2041-1723

Bhandare, Pranjali and Narain, Ashwin and Hofstetter, Julia and Rummel, Teresa and Wenzel, Julia and Schuelein-Voelk, Christina and Lamer, Stephanie and Eilers, Ursula and Schlosser, Andreas and Eilers, Martin and Erhard, Florian and Wolf, Elmar (2024) Phenotypic screens identify SCAF1 as critical activator of RNAPII elongation and global transcription. NUCLEIC ACIDS RESEARCH, 53 (4). ISSN 0305-1048, 1362-4962

Prusty, Archana Bairavasundaram and Hirmer, Anja and Sierra-Delgado, Julieth Andrea and Huber, Hannes and Guenther, Ulf-Peter and Schlosser, Andreas and Dybkov, Olexandr and Yildirim, Ezgi and Urlaub, Henning and Meyer, Kathrin C. and Jablonka, Sibylle and Erhard, Florian and Fischer, Utz (2024) RNA helicase IGHMBP2 regulates THO complex to ensure cellular mRNA homeostasis. CELL REPORTS, 43 (2): 113802. ISSN 2211-1247

Rummel, Teresa and Sakellaridi, Lygeri and Erhard, Florian (2023) grandR: a comprehensive package for nucleotide conversion RNA-seq data analysis. NATURE COMMUNICATIONS, 14 (1): 3559. ISSN , 2041-1723

Hennig, Thomas and Prusty, Archana B. and Kaufer, Benedikt B. and Whisnant, Adam W. and Lodha, Manivel and Enders, Antje and Thomas, Julius and Kasimir, Francesca and Grothey, Arnhild and Klein, Teresa and Herb, Stefanie and Juerges, Christopher and Sauer, Markus and Fischer, Utz and Rudel, Thomas and Meister, Gunter and Erhard, Florian and Dölken, Lars and Prusty, Bhupesh K. (2022) Selective inhibition of miRNA processing by a herpesvirus-encoded miRNA. NATURE, 605 (7910). pp. 539-544. ISSN 0028-0836, 1476-4687

Huenten, Sabine and Kaller, Markus and Drepper, Friedel and Oeljeklaus, Silke and Bonfert, Thomas and Erhard, Florian and Dueck, Anne and Eichner, Norbert and Friedel, Caroline C. and Meister, Gunter and Zimmer, Ralf and Warscheid, Bettina and Hermeking, Heiko (2015) p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses. MOLECULAR & CELLULAR PROTEOMICS, 14 (10). pp. 2609-2629. ISSN 1535-9476, 1535-9484