Design, Synthesis and Biological Evaluation of 7-Chloro-9H-pyrimido[4,5-b]indole-based Glycogen Synthase Kinase-3 beta Inhibitors

Andreev, Stanislav and Pantsar, Tatu and Ansideri, Francesco and Kudolo, Mark and Forster, Michael and Schollmeyer, Dieter and Laufer, Stefan A. and Koch, Pierre (2019) Design, Synthesis and Biological Evaluation of 7-Chloro-9H-pyrimido[4,5-b]indole-based Glycogen Synthase Kinase-3 beta Inhibitors. MOLECULES, 24 (12): 2331. ISSN , 1420-3049

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Abstract

Glycogen synthase kinase-3 beta (GSK-3 beta) represents a relevant drug target for the treatment of neurodegenerative pathologies including Alzheimer's disease. We herein report on the optimization of a novel class of GSK-3 beta inhibitors based on the tofacitinib-derived screen hit 3-((3R,4R)-3-((7-chloro-9H-pyrimido[4,5-b]indol-4-yl)(methyl)amino)-4-methylpiperidin-1-yl)-3-oxopropanenitrile (1). We synthesized a series of 19 novel 7-chloro-9H-pyrimido[4,5-b]indole-based derivatives and studied their structure-activity relationships with focus on the cyanoacetyl piperidine moiety. We unveiled the crucial role of the nitrile group and its importance for the activity of this compound series. A successful rigidization approach afforded 3-(3aRS,7aSR)-(1-(7-chloro-9H-pyrimido[4,5-b]indol-4-yl)octahydro-6H-pyrrolo[2,3-c]pyridin-6-yl)-propanenitrile (24), which displayed an IC50 value of 130 nM on GSK-3 beta and was further characterized by its metabolic stability. Finally, we disclosed the putative binding modes of the most potent inhibitors within the ATP binding site of GSK-3 beta by 1 mu s molecular dynamics simulations.

Item Type: Article
Uncontrolled Keywords: DENSITY-FUNCTIONAL THEORY; PROTEIN-KINASE; ORGANIC-MOLECULES; PK(A) PREDICTION; POTENT; DISCOVERY; MUSCLE; Glycogen synthase kinase-3 beta; 7-chloro-9H-pyrimido[4; 5-b]indole; protein kinase; kinase inhibitor; tofacitinib
Subjects: 500 Science > 540 Chemistry & allied sciences
Divisions: Chemistry and Pharmacy > Institute of Pharmacy > Pharmaceutical/Medicinal Chemistry II (Prof. Buschauer)
Depositing User: Dr. Gernot Deinzer
Date Deposited: 14 Apr 2020 05:04
Last Modified: 14 Apr 2020 05:04
URI: https://pred.uni-regensburg.de/id/eprint/26859

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