Specificity and direction of depolymerization of beta-poly(L-malate) catalysed by polymalatase from Physarum polycephalum - Fluorescence labeling at the carboxy-terminus of beta-poly(L-malate)

Gasslmaier, Bernd and Holler, Eggehard (1997) Specificity and direction of depolymerization of beta-poly(L-malate) catalysed by polymalatase from Physarum polycephalum - Fluorescence labeling at the carboxy-terminus of beta-poly(L-malate). EUROPEAN JOURNAL OF BIOCHEMISTRY, 250 (2). pp. 308-314. ISSN 0014-2956

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Abstract

beta-Poly(L-malate), a major constituent of nuclei in plasmodia of Physarum polycephalum, is enzymatically degraded to L-malate after secretion into the culture medium. This depolymerization is specifically catalysed by an endogenous polymalatase. The mode of action and the specificity criteria have been investigated by employing various chemical derivatives of beta-poly(L-malate), including substitution at the hydroxy-terminus and carboxy-terminus of the polymer, esterification of the pending alpha-carboxylate, and beta-poly(DL-malate). The results of the investigation were summarized in a specificity model that involved recognition of the hydroxy-terminus and of the alpha-carboxylate as substituents of the asymmetric carbon in the malic acid unit. Depolymerization proceeded from the hydroxy-terminus towards the carboxy-terminus, thereby degrading the polymer to L-malate. When the terminal beta-carboxylate had been amidated with the fluorescent N-(1-naphthyl)ethylenediamine, degradation was normal but was arrested at the level of the terminal beta-carboxy-substituted dimer. It should be possible to employ polymalatase as a tool for the detection of branching and other modifications of beta-poly(L-malate).

Item Type: Article
Uncontrolled Keywords: DNA-POLYMERASE-ALPHA; POLY(BETA-L-MALIC ACID); AUREOBASIDIUM-PULLULANS; PLASMODIA; beta-poly(L-malate); polymalatase; polymalate depolymerase; Physarum polycephalum; specificity
Subjects: 500 Science > 540 Chemistry & allied sciences
500 Science > 570 Life sciences
Divisions: Biology, Preclinical Medicine > Institut für Biophysik und physikalische Biochemie > Alumni or Retired > Prof. Dr. Eggehard Holler
Depositing User: Dr. Gernot Deinzer
Date Deposited: 01 Mar 2023 11:52
Last Modified: 01 Mar 2023 11:52
URI: https://pred.uni-regensburg.de/id/eprint/50352

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