Lizio, Marina and Harshbarger, Jayson and Shimoji, Hisashi and Severin, Jessica and Kasukawa, Takeya and Sahin, Serkan and Abugessaisa, Imad and Fukuda, Shiro and Hori, Fumi and Ishikawa-Kato, Sachi and Mungall, Christopher J. and Arner, Erik and Baillie, J. Kenneth and Bertin, Nicolas and Bono, Hidemasa and de Hoon, Michiel and Diehl, Alexander D. and Dimont, Emmanuel and Freeman, Tom C. and Fujieda, Kaori and Hide, Winston and Kaliyaperumal, Rajaram and Katayama, Toshiaki and Lassmann, Timo and Meehan, Terrence F. and Nishikata, Koro and Ono, Hiromasa and Rehli, Michael and Sandelin, Albin and Schultes, Erik A. and Hoen, Peter A. C't and Tatum, Zuotian and Thompson, Mark and Toyoda, Tetsuro and Wright, Derek W. and Daub, Carsten O. and Itoh, Masayoshi and Carninci, Piero and Hayashizaki, Yoshihide and Forrest, Alistair R. R. and Kawaji, Hideya (2015) Gateways to the FANTOM5 promoter level mammalian expression atlas. GENOME BIOLOGY, 16: 22. ISSN 1465-6906, 1474-760X
Full text not available from this repository. (Request a copy)Abstract
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | ANALYSIS GENE-EXPRESSION; CAP-ANALYSIS; TRANSCRIPTIONAL LANDSCAPE; FUNCTIONAL ANNOTATION; NATIONAL CENTER; HUMAN GENOME; RNA-SEQ; DATABASE; ONTOLOGIES; MOUSE; |
| Subjects: | 600 Technology > 610 Medical sciences Medicine |
| Divisions: | Medicine > Lehrstuhl für Innere Medizin III (Hämatologie und Internistische Onkologie) |
| Depositing User: | Dr. Gernot Deinzer |
| Date Deposited: | 25 Jul 2019 12:55 |
| Last Modified: | 25 Jul 2019 12:55 |
| URI: | https://pred.uni-regensburg.de/id/eprint/6115 |
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