Oxelman, Bengt and Brysting, Anne Krag and Jones, Graham R. and Marcussen, Thomas and Oberprieler, Christoph and Pfeil, Bernard E. (2017) Phylogenetics of Allopolyploids. In: UNSPECIFIED Annual Review of Ecology Evolution and Systematics,, 48 . ANNUAL REVIEWS, PALO ALTO, pp. 543-557. ISBN 978-0-8243-1448-4
Full text not available from this repository. (Request a copy)Abstract
We give an overview of recently developed methods to reconstruct phylogenies of taxa that include allopolyploids that have originated in relatively recent times-in other words, taxa for which at least some of the parental lineages of lower ploidy levels are not extinct and for which ploidy information is clearly shown by variation in chromosome counts. We review how these methods have been applied to empirical data, discuss challenges, and outline prospects for future research. In the absence of recombination between parental subgenomes, the allopolyploid phylogenetic histories can in principle be treated as genome tree inference. However, without whole genome or whole chromosome data, sequences must be assigned from genes sampled to parental subgenomes. The new version of the AlloppNET method, which now can handle any number of species at the diploid and tetraploid level and any number of hybridizations, is a promising attempt that can also treat gene tree discordance due to the coalescent process. The ongoing development of models that take migration, paralogy, and uncertainties in species delimitations into account offers exciting opportunities for the future of inference of species networks.
| Item Type: | Book Section |
|---|---|
| Uncontrolled Keywords: | INFERRING SPECIES NETWORKS; COPY NUCLEAR GENES; MEDICAGO-SATIVA; SILENE CARYOPHYLLACEAE; MOLECULAR SYSTEMATICS; POLYPLOID COMPLEXES; TREES; EVOLUTION; HYBRIDIZATION; SEQUENCES; multispecies coalescent networks; allopolyploidy; phylogenetics |
| Subjects: | 500 Science > 580 Botanical sciences |
| Divisions: | Biology, Preclinical Medicine > Institut für Pflanzenwissenschaften > Group Plant Systematics and Evolution (Prof. Dr. Christoph Oberprieler) |
| Depositing User: | Dr. Gernot Deinzer |
| Date Deposited: | 14 Dec 2018 13:01 |
| Last Modified: | 06 Apr 2020 09:12 |
| URI: | https://pred.uni-regensburg.de/id/eprint/622 |
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