Items where Author is "Thomm, Michael"

Article

Dexl, Stefan and Reichelt, Robert and Kraatz, Katharina and Schulz, Sarah and Grohmann, Dina and Bartlett, Michael and Thomm, Michael (2018) Displacement of the transcription factor B reader domain during transcription initiation. NUCLEIC ACIDS RESEARCH, 46 (19). pp. 10066-10081. ISSN 0305-1048, 1362-4962

Reichelt, Robert and Ruperti, Katharina M. A. and Kreuzer, Martina and Dexl, Stefan and Thomm, Michael and Hausner, Winfried (2018) The Transcriptional Regulator TFB-RF1 Activates Transcription of a Putative ABC Transporter in Pyrococcus furiosus. FRONTIERS IN MICROBIOLOGY, 9: 838. ISSN 1664-302X

Antranikian, Garabed and Suleiman, Marcel and Schaefers, Christian and Adams, Michael W. W. and Bartolucci, Simonetta and Blamey, Jenny M. and Birkeland, Nils-Kare and Bonch-Osmolovskaya, Elizaveta and da Costa, Milton S. and Cowan, Don and Danson, Michael and Forterre, Patrick and Kelly, Robert and Ishino, Yoshizumi and Littlechild, Jennifer and Moracci, Marco and Noll, Kenneth and Oshima, Tairo and Robb, Frank and Rossi, Mose and Santos, Helena and Schoenheit, Peter and Sterner, Reinhard and Thauer, Rudolf and Thomm, Michael and Wiegel, Juergen and Stetter, Karl Otto (2017) Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island. EXTREMOPHILES, 21 (4). pp. 733-742. ISSN 1431-0651, 1433-4909

Smollett, Katherine and Blombach, Fabian and Reichelt, Robert and Thomm, Michael and Werner, Finn (2017) A global analysis of transcription reveals two modes of Spt4/5 recruitment to archaeal RNA polymerase. NATURE MICROBIOLOGY, 2 (5): 17021. ISSN 2058-5276

Reichelt, Robert and Gindner, Antonia and Thomm, Michael and Hausner, Winfried (2016) Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus. BMC GENOMICS, 17: 40. ISSN 1471-2164

Gagen, Emma J. and Yoshinaga, Marcos Y. and Prado, Franka Garcia and Hinrichs, Kai-Uwe and Thomm, Michael (2016) The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL: 5938289. ISSN 1472-3646, 1472-3654

Elling, Felix J. and Becker, Kevin W. and Koenneke, Martin and Schroeder, Jan M. and Kellermann, Matthias Y. and Thomm, Michael and Hinrichs, Kai-Uwe (2016) Respiratory quinones in Archaea: phylogenetic distribution and application as biomarkers in the marine environment. ENVIRONMENTAL MICROBIOLOGY, 18 (2). pp. 692-707. ISSN 1462-2912, 1462-2920

Yoshinaga, Marcos Y. and Gagen, Emma J. and Woermer, Lars and Broda, Nadine K. and Meador, Travis B. and Wendt, Jenny and Thomm, Michael and Hinrichs, Kai-Uwe (2015) Methanothermobacter thermautotrophicus modulates s membrane lipids in response to hydrogen and nutrient availability. FRONTIERS IN MICROBIOLOGY, 6: 5. ISSN 1664-302X

Ahmad, Misbha Ud Din and Waege, Ingrid and Hausner, Winfried and Thomm, Michael and Boos, Winfried and Diederichs, Kay and Welte, Wolfram (2015) Structural Insights into Nonspecific Binding of DNA by TrmBL2, an Archaeal Chromatin Protein. JOURNAL OF MOLECULAR BIOLOGY, 427 (20). pp. 3216-3229. ISSN 0022-2836, 1089-8638

Sommer, Bettina and Waege, Ingrid and Poellmann, David and Seitz, Tobias and Thomm, Michael and Sterner, Reinhard and Hausner, Winfried (2014) Activation of a Chimeric Rpb5/RpoH Subunit Using Library Selection. PLOS ONE, 9 (1): e87485. ISSN 1932-6203

Meador, Travis B. and Gagen, Emma J. and Loscar, Michael E. and Goldhammer, Tobias and Yoshinaga, Marcos Y. and Wendt, Jenny and Thomm, Michael and Hinrichs, Kai-Uwe (2014) Thermococcus kodakarensis modulates its polar membrane lipids and elemental composition according to growth stage and phosphate availability. FRONTIERS IN MICROBIOLOGY, 5: 10. ISSN 1664-302X

Pluchon, Pierre-Francois and Fouqueau, Thomas and Creze, Christophe and Laurent, Sebastien and Briffotaux, Julien and Hogrel, Gaelle and Palud, Adeline and Henneke, Ghislaine and Godfroy, Anne and Hausner, Winfried and Thomm, Michael and Nicolas, Jacques and Flament, Didier (2013) An Extended Network of Genomic Maintenance in the Archaeon Pyrococcus abyssi Highlights Unexpected Associations between Eucaryotic Homologs. PLOS ONE, 8 (11): e79707. ISSN 1932-6203

Kreuzer, Martina and Schmutzler, Karolin and Waege, Ingrid and Thomm, Michael and Hausner, Winfried (2013) Genetic engineering of Pyrococcus furiosus to use chitin as a carbon source. BMC BIOTECHNOLOGY, 13: 9. ISSN 1472-6750

Gagen, Emma J. and Huber, Harald and Meador, Travis and Hinrichs, Kai-Uwe and Thomm, Michael (2013) Novel Cultivation-Based Approach To Understanding the Miscellaneous Crenarchaeotic Group (MCG) Archaea from Sedimentary Ecosystems. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79 (20). pp. 6400-6406. ISSN 0099-2240, 1098-5336

Armache, Jean-Paul and Anger, Andreas M. and Marquez, Viter and Franckenberg, Sibylle and Froehlich, Thomas and Villa, Elizabeth and Berninghausen, Otto and Thomm, Michael and Arnold, Georg J. and Beckmann, Roland and Wilson, Daniel N. (2013) Promiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution. NUCLEIC ACIDS RESEARCH, 41 (2). pp. 1284-1293. ISSN 0305-1048, 1362-4962

Fouqueau, Thomas and Zeller, Mirijam E. and Cheung, Alan C. and Cramer, Patrick and Thomm, Michael (2013) The RNA polymerase trigger loop functions in all three phases of the transcription cycle. NUCLEIC ACIDS RESEARCH, 41 (14). pp. 7048-7059. ISSN 0305-1048

Ochs, Simon M. and Thumann, Sybille and Richau, Renate and Weirauch, Matt T. and Lowe, Todd M. and Thomm, Michael and Hausner, Winfried (2012) Activation of Archaeal Transcription Mediated by Recruitment of Transcription Factor B. JOURNAL OF BIOLOGICAL CHEMISTRY, 287 (22). pp. 18863-18871. ISSN 0021-9258

Becker, Thomas and Franckenberg, Sibylle and Wickles, Stephan and Shoemaker, Christopher J. and Anger, Andreas M. and Armache, Jean-Paul and Sieber, Heidemarie and Ungewickell, Charlotte and Berninghausen, Otto and Daberkow, Ingo and Karcher, Annette and Thomm, Michael and Hopfner, Karl-Peter and Green, Rachel and Beckmann, Roland (2012) Structural basis of highly conserved ribosome recycling in eukaryotes and archaea. NATURE, 482 (7386). 501-U221. ISSN 0028-0836, 1476-4687

Klingl, Andreas and Moissl-Eichinger, Christine and Wanner, Gerhard and Zweck, Josef and Huber, Harald and Thomm, Michael and Rachel, Reinhard (2011) Analysis of the surface proteins of Acidithiobacillus ferrooxidans strain SP5/1 and the new, pyrite-oxidizing Acidithiobacillus isolate HV2/2, and their possible involvement in pyrite oxidation. ARCHIVES OF MICROBIOLOGY, 193 (12). pp. 867-882. ISSN 0302-8933

Ruan, Wenjie and Lehmann, Elisabeth and Thomm, Michael and Kostrewa, Dirk and Cramer, Patrick (2011) Evolution of Two Modes of Intrinsic RNA Polymerase Transcript Cleavage. JOURNAL OF BIOLOGICAL CHEMISTRY, 286 (21). pp. 18701-18707. ISSN 0021-9258

Marquez, Viter and Froehlich, Thomas and Armache, Jean-Paul and Sohmen, Daniel and Doenhoefer, Alexandra and Mikolajka, Aleksandra and Berninghausen, Otto and Thomm, Michael and Beckmann, Roland and Arnold, Georg J. and Wilson, Daniel N. (2011) Proteomic Characterization of Archaeal Ribosomes Reveals the Presence of Novel Archaeal-Specific Ribosomal Proteins. JOURNAL OF MOLECULAR BIOLOGY, 405 (5). pp. 1215-1232. ISSN 0022-2836, 1089-8638

Armache, Jean-Paul and Jarasch, Alexander and Anger, Andreas M. and Villa, Elizabeth and Becker, Thomas and Bhushan, Shashi and Jossinet, Fabrice and Habeck, Michael and Dindar, Guelcin and Franckenberg, Sibylle and Marquez, Viter and Mielke, Thorsten and Thomm, Michael and Berninghausen, Otto and Beatrix, Birgitta and Soeding, Johannes and Westhof, Eric and Wilson, Daniel N. and Beckmann, Roland (2010) Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-angstrom resolution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107 (46). pp. 19748-19753. ISSN 0027-8424

Keese, Annette M. and Schut, Gerrit J. and Ouhammouch, Mohamed and Adams, Michael W. W. and Thomm, Michael (2010) Genome-Wide Identification of Targets for the Archaeal Heat Shock Regulator Phr by Cell-Free Transcription of Genomic DNA. JOURNAL OF BACTERIOLOGY, 192 (5). pp. 1292-1298. ISSN 0021-9193, 1098-5530

Armache, Jean-Paul and Jarasch, Alexander and Anger, Andreas M. and Villa, Elizabeth and Becker, Thomas and Bhushan, Shashi and Jossinet, Fabrice and Habeck, Michael and Dindar, Guelcin and Franckenberg, Sibylle and Marquez, Viter and Mielke, Thorsten and Thomm, Michael and Berninghausen, Otto and Beatrix, Birgitta and Soeding, Johannes and Westhof, Eric and Wilson, Daniel N. and Beckmann, Roland (2010) Localization of eukaryote-specific ribosomal proteins in a 5.5-angstrom cryo-EM map of the 80S eukaryotic ribosome. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107 (46). pp. 19754-19759. ISSN 0027-8424

Gruenberg, Sebastian and Reich, Christoph and Zeller, Mirijam E. and Bartlett, Michael S. and Thomm, Michael (2010) Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes. NUCLEIC ACIDS RESEARCH, 38 (6). pp. 1950-1963. ISSN 0305-1048, 1362-4962

Waege, Ingrid and Schmid, Georg and Thumann, Sybille and Thomm, Michael and Hausner, Winfried (2010) Shuttle Vector-Based Transformation System for Pyrococcus furiosus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76 (10). pp. 3308-3313. ISSN 0099-2240

Yang, Hua and Lipscomb, Gina L. and Keese, Annette M. and Schut, Gerrit J. and Thomm, Michael and Adams, Michael W. W. and Wang, Bi Cheng and Scott, Robert A. (2010) SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch. MOLECULAR MICROBIOLOGY, 77 (5). pp. 1111-1122. ISSN 0950-382X, 1365-2958

Thomm, Michael and Surma, Melanie (2010) TrmB an archael transcriptional regulator. FASEB JOURNAL, 24 (1Suppl): 679.6. ISSN 0892-6638

Kostrewa, Dirk and Zeller, Mirijam E. and Armache, Karim-Jean and Seizl, Martin and Leike, Kristin and Thomm, Michael and Cramer, Patrick (2009) RNA polymerase II-TFIIB structure and mechanism of transcription initiation. NATURE, 462 (7271). pp. 323-330. ISSN 0028-0836, 1476-4687

Lipscomb, Gina L. and Keese, Annette M. and Cowart, Darin M. and Schut, Gerrit J. and Thomm, Michael and Adams, Michael W. W. and Scott, Robert A. (2009) SurR: a transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus. MOLECULAR MICROBIOLOGY, 71 (2). pp. 332-349. ISSN 0950-382X, 1365-2958

Reich, Christoph and Zeller, Mirijam and Milkereit, Philipp and Hausner, Winfried and Cramer, Patrick and Tschochner, Herbert and Thomm, Michael (2009) The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro. MOLECULAR MICROBIOLOGY, 71 (4). pp. 989-1002. ISSN 0950-382X, 1365-2958

Micorescu, Michael and Grunberg, Sebastian and Franke, Andreas and Cramer, Patrick and Thomm, Michael and Bartlett, Michael (2008) Archaeal transcription: Function of an alternative transcription factor B from Pyrococcus furiosus. JOURNAL OF BACTERIOLOGY, 190 (1). pp. 157-167. ISSN 0021-9193, 1098-5530

Etzel, Katja and Klingl, Andreas and Huber, Harald and Rachel, Reinhard and Schmalz, Gottfried and Thomm, Michael and Depmeier, Wulf (2008) Etching of {111} and {210} synthetic pyrite surfaces by two archaeal strains, Metallosphaera sedula and Sulfolobus metallicus. HYDROMETALLURGY, 94 (1-4). pp. 116-120. ISSN 0304-386X, 1879-1158

Naji, Souad and Bertero, Michela G. and Spitalny, Patrizia and Cramer, Patrick and Thomm, Michael (2008) Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement. NUCLEIC ACIDS RESEARCH, 36 (2). pp. 676-687. ISSN 0305-1048

Spitalny, Patrizia and Thomm, Michael (2008) A polymerase III-like reinitiation mechanism is operating in regulation of histone expression in archaea. MOLECULAR MICROBIOLOGY, 67 (5). pp. 958-970. ISSN 0950-382X

Lee, Sung-Jae and Surma, Melanie and Hausner, Winfried and Thomm, Michael and Boos, Winfried (2008) The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus. ARCHIVES OF MICROBIOLOGY, 190 (3). pp. 247-256. ISSN 0302-8933

Lee, Sung-Jae and Surma, Melanie and Seitz, Sabine and Hausner, Winfried and Thomm, Michael and Boos, Winfried (2007) Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus. MOLECULAR MICROBIOLOGY, 65 (2). pp. 305-318. ISSN 0950-382X

Liu, Wei and Vierke, Gudrun and Wenke, Ann-Kathrin and Thomm, Michael and Ladenstein, Rudolf (2007) Crystal structure of the archaeal heat shock regulator from Pyrococcus furiosus: A molecular chimera representing eukaryal and bacterial features. JOURNAL OF MOLECULAR BIOLOGY, 369 (2). pp. 474-488. ISSN 0022-2836, 1089-8638

Lee, Sung-Jae and Surma, Melanie and Seitz, Sabine and Hausner, Winfried and Thomm, Michael and Boos, Winfried (2007) Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus. MOLECULAR MICROBIOLOGY, 64 (6). pp. 1499-1505. ISSN 0950-382X

Naji, Souad and Gruenberg, Sebastian and Thomm, Michael (2007) The RPB7 orthologue E ' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation. JOURNAL OF BIOLOGICAL CHEMISTRY, 282 (15). pp. 11047-11057. ISSN 0021-9258, 1083-351X

Grunberg, Sebastian and Bartlett, Michael S. and Naji, Souad and Thomm, Michael (2007) Transcription factor E is a part of transcription elongation complexes. JOURNAL OF BIOLOGICAL CHEMISTRY, 282 (49). pp. 35482-35490. ISSN 0021-9258, 1083-351X

Pisa, Kim Y. and Huber, Harald and Thomm, Michael and Mueller, Volker (2007) A sodium ion-dependent A(1)A(o) ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus. FEBS JOURNAL, 274 (15). pp. 3928-3938. ISSN 1742-464X

Goede, Bernd and Naji, Souad and von Kampen, Oliver and Ilg, Karin and Thomm, Michael (2006) Protein-protein interactions in the archaeal transcriptional machinery - Binding studies of isolated RNA polymerase subunits and transcription factors. JOURNAL OF BIOLOGICAL CHEMISTRY, 281 (41). pp. 30581-30592. ISSN 0021-9258

Lee, Sung‐Jae and Moulakakis, Christina and Koning, Sonja M. and Hausner, Winfried and Thomm, Michael and Boos, Winfried (2005) TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers. MOLECULAR MICROBIOLOGY, 57 (6). pp. 1797-1807. ISSN 0950-382X, 1365-2958

Spitalny, Patrizia and Thomm, Michael (2003) Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation. JOURNAL OF BIOLOGICAL CHEMISTRY, 278 (33). pp. 30497-30505. ISSN 0021-9258

Vierke, Gudrun and Engelmann, Afra and Hebbeln, Carina and Thomm, Michael (2003) A novel archaeal transcriptional regulator of heat shock response. JOURNAL OF BIOLOGICAL CHEMISTRY, 278 (1). pp. 18-26. ISSN 0021-9258

Thomm, Michael and Sherf, B. A. and Reeve, J. N. (1988) RNA polymerase-binding and transcription initiation sites upstream of the methyl reductase operon of Methanococcus vannielii. JOURNAL OF BACTERIOLOGY, 170 (4). pp. 1958-1961. ISSN 0021-9193, 1098-5530

Other

Elling, Felix J. and Koenneke, Martin and Nicol, Graeme W. and Stieglmeier, Michaela and Bayer, Barbara and Spieck, Eva and de la Torre, Jose R. and Becker, Kevin W. and Thomm, Michael and Prosser, James I. and Herndl, Gerhard J. and Schleper, Christa and Hinrichs, Kai-Uwe (2017) Chemotaxonomic characterisation of the thaumarchaeal lipidome. WILEY, HOBOKEN.

Gindner, Antonia and Hausner, Winfried and Thomm, Michael (2014) The TrmB family: a versatile group of transcriptional regulators in Archaea. SPRINGER JAPAN KK, TOKYO.